IL_4V49_167

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CC*GUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_167 not in the Motif Atlas

Geometric match to IL_1U9S_002

Geometric discrepancy: 0.3828

The information below is about IL_1U9S_002

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4V49|1|B9|C|32
4V49|1|B9|C|33
*
4V49|1|B9|G|53
4V49|1|B9|U|54
4V49|1|B9|C|55
4V49|1|B9|G|56

Current chains

Chain B9

5S RIBOSOMAL RNA

Nearby chains

Chain BD

50S ribosomal protein L5

Chain BM

50S ribosomal protein L18