IL_4V49_195

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_195 not in the Motif Atlas

Homologous match to IL_7A0S_111

Geometric discrepancy: 0.5565

The information below is about IL_7A0S_111

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V49|1|B0|U|871
4V49|1|B0|G|872
4V49|1|B0|U|873
4V49|1|B0|A|874
4V49|1|B0|G|875
*
4V49|1|B0|C|927
4V49|1|B0|G|928
4V49|1|B0|A|929
4V49|1|B0|A|930
4V49|1|B0|G|931

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B9

5S ribosomal RNA; 5S rRNA

Chain BK

50S ribosomal protein L16

Chain BU

50S ribosomal protein L27