IL_4V4A_059

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_059 not in the Motif Atlas

Geometric match to IL_5J7L_303

Geometric discrepancy: 0.3005

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V4A|1|AA|C|1431
4V4A|1|AA|G|1432
4V4A|1|AA|A|1433
4V4A|1|AA|A|1434
4V4A|1|AA|G|1435
*
4V4A|1|AA|C|1466
4V4A|1|AA|G|1467
4V4A|1|AA|A|1468
4V4A|1|AA|G|1469

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain B0

Large subunit ribosomal RNA; LSU rRNA

Chain BN

50S ribosomal protein L19