IL_4V4A_068

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_068 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.2223

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

4V4A|1|B0|G|165
4V4A|1|B0|G|166
4V4A|1|B0|A|167
4V4A|1|B0|A|168
4V4A|1|B0|C|169
4V4A|1|B0|U|170
4V4A|1|B0|G|171
*
4V4A|1|B0|C|178
4V4A|1|B0|U|179
4V4A|1|B0|C|180
4V4A|1|B0|A|181
4V4A|1|B0|G|182
4V4A|1|B0|U|183
4V4A|1|B0|A|184
4V4A|1|B0|C|185

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BJ

50S ribosomal protein L15

Chain BY

50S ribosomal protein L31