IL_4V4A_069

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_069 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.2639

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V4A|1|B0|G|215
4V4A|1|B0|U|216
4V4A|1|B0|U|217
4V4A|1|B0|A|218
4V4A|1|B0|G|219
4V4A|1|B0|U|220
4V4A|1|B0|A|221
4V4A|1|B0|G|222
*
4V4A|1|B0|C|230
4V4A|1|B0|G|231
4V4A|1|B0|A|232
4V4A|1|B0|A|233
4V4A|1|B0|C|234
4V4A|1|B0|C|235
4V4A|1|B0|C|236

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BJ

50S ribosomal protein L15