IL_4V4A_076

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V4A|1|B0|G|814, 4V4A|1|B0|G|818

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_076 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.3619

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V4A|1|B0|G|687
4V4A|1|B0|A|688
4V4A|1|B0|A|689
4V4A|1|B0|A|690
4V4A|1|B0|C|691
*
4V4A|1|B0|G|812
4V4A|1|B0|A|813
4V4A|1|B0|G|814
4V4A|1|B0|A|815
4V4A|1|B0|U|816
4V4A|1|B0|A|817
4V4A|1|B0|G|818
4V4A|1|B0|C|819

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BC

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L15