IL_4V4A_087
3D structure
- PDB id
- 4V4A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 9.5 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4A_087 not in the Motif Atlas
- Geometric match to IL_5J7L_272
- Geometric discrepancy: 0.3397
- The information below is about IL_5J7L_272
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4A|1|B0|G|877
4V4A|1|B0|C|878
4V4A|1|B0|A|879
4V4A|1|B0|C|880
4V4A|1|B0|U|881
*
4V4A|1|B0|A|921
4V4A|1|B0|A|922
4V4A|1|B0|A|923
4V4A|1|B0|C|924
Current chains
- Chain B0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B9
- 5S ribosomal RNA; 5S rRNA
- Chain BK
- 50S ribosomal protein L16
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