IL_4V4A_103

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V4A|1|B0|A|1224

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_103 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.2665

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4V4A|1|B0|C|1221
4V4A|1|B0|G|1222
4V4A|1|B0|G|1223
4V4A|1|B0|A|1224
4V4A|1|B0|G|1225
4V4A|1|B0|A|1226
4V4A|1|B0|A|1227
4V4A|1|B0|G|1228
*
4V4A|1|B0|U|1247
4V4A|1|B0|G|1248
4V4A|1|B0|G|1249
4V4A|1|B0|A|1250
4V4A|1|B0|G|1251

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BJ

50S ribosomal protein L15

Chain BO

50S ribosomal protein L20

Chain BQ

50S ribosomal protein L22