3D structure

PDB id
4V4A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
9.5 Å

Loop

Sequence
CGGAGAAG*UGGAG
Length
13 nucleotides
Bulged bases
4V4A|1|B0|A|1224
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4A_103 not in the Motif Atlas
Homologous match to IL_7RQB_047
Geometric discrepancy: 0.2665
The information below is about IL_7RQB_047
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.2
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
28

Unit IDs

4V4A|1|B0|C|1221
4V4A|1|B0|G|1222
4V4A|1|B0|G|1223
4V4A|1|B0|A|1224
4V4A|1|B0|G|1225
4V4A|1|B0|A|1226
4V4A|1|B0|A|1227
4V4A|1|B0|G|1228
*
4V4A|1|B0|U|1247
4V4A|1|B0|G|1248
4V4A|1|B0|G|1249
4V4A|1|B0|A|1250
4V4A|1|B0|G|1251

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

Chain BJ
50S ribosomal protein L15
Chain BO
50S ribosomal protein L20
Chain BQ
50S ribosomal protein L22

Coloring options:


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