IL_4V4A_145

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_145 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.3429

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V4A|1|B0|C|2445
4V4A|1|B0|C|2446
4V4A|1|B0|G|2447
4V4A|1|B0|A|2448
4V4A|1|B0|G|2449
*
4V4A|1|B0|C|2459
4V4A|1|B0|G|2460
4V4A|1|B0|G|2461
4V4A|1|B0|C|2462
4V4A|1|B0|G|2463

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BK

50S ribosomal protein L16