IL_4V4A_162

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V4A|1|B0|G|3116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_162 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3714

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4V4A|1|B0|G|3110
4V4A|1|B0|C|3111
4V4A|1|B0|G|3112
4V4A|1|B0|U|3113
4V4A|1|B0|A|3114
4V4A|1|B0|G|3115
4V4A|1|B0|G|3116
4V4A|1|B0|A|3117
4V4A|1|B0|U|3118
4V4A|1|B0|A|3119
4V4A|1|B0|G|3120
*
4V4A|1|B0|C|3178
4V4A|1|B0|C|3179

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S ribosomal protein L1P