3D structure

PDB id
4V4A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
9.5 Å

Loop

Sequence
GGAG*CGCCGGUGAAAUAC
Length
18 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4A_163 not in the Motif Atlas
Homologous match to IL_3U4M_003
Geometric discrepancy: 0.2106
The information below is about IL_3U4M_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_75283.2
Basepair signature
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
Number of instances in this motif group
3

Unit IDs

4V4A|1|B0|G|3124
4V4A|1|B0|G|3125
4V4A|1|B0|A|3126
4V4A|1|B0|G|3127
*
4V4A|1|B0|C|3161
4V4A|1|B0|G|3162
4V4A|1|B0|C|3163
4V4A|1|B0|C|3164
4V4A|1|B0|G|3165
4V4A|1|B0|G|3166
4V4A|1|B0|U|3167
4V4A|1|B0|G|3168
4V4A|1|B0|A|3169
4V4A|1|B0|A|3170
4V4A|1|B0|A|3171
4V4A|1|B0|U|3172
4V4A|1|B0|A|3173
4V4A|1|B0|C|3174

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

Chain B5
50S ribosomal protein L1P

Coloring options:


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