IL_4V4A_177

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CGU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4A_177 not in the Motif Atlas

Geometric match to IL_5MSF_001

Geometric discrepancy: 0.2793

The information below is about IL_5MSF_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V4A|1|B0|C|391
4V4A|1|B0|G|392
4V4A|1|B0|U|393
*
4V4A|1|B0|A|407
4V4A|1|B0|U|408
4V4A|1|B0|G|409

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BY

50S ribosomal protein L31