IL_4V4G_100

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4V4G|1|BB|C|1792, 4V4G|1|BB|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_100 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.4254

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V4G|1|BB|U|1789
4V4G|1|BB|G|1790
4V4G|1|BB|C|1791
4V4G|1|BB|C|1792
4V4G|1|BB|A|1793
4V4G|1|BB|A|1794
4V4G|1|BB|C|1795
*
4V4G|1|BB|G|1805
4V4G|1|BB|G|1806
4V4G|1|BB|A|1807
4V4G|1|BB|C|1808
4V4G|1|BB|G|1809
4V4G|1|BB|U|1810
4V4G|1|BB|A|1811
4V4G|1|BB|U|1812
4V4G|1|BB|A|1813

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2