IL_4V4G_223

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

4V4G|1|DB|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_223 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.3487

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V4G|1|DB|C|1703
4V4G|1|DB|G|1704
4V4G|1|DB|U|1705
4V4G|1|DB|A|1706
4V4G|1|DB|A|1707
4V4G|1|DB|C|1708
*
4V4G|1|DB|G|1713
4V4G|1|DB|A|1714
4V4G|1|DB|A|1715
4V4G|1|DB|G|1716
4V4G|1|DB|A|1717
4V4G|1|DB|A|1718
4V4G|1|DB|G|1719

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA