IL_4V4G_402

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4V4G|1|GA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_402 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.2789

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4V4G|1|GA|G|662
4V4G|1|GA|A|663
4V4G|1|GA|G|664
4V4G|1|GA|A|665
4V4G|1|GA|G|666
*
4V4G|1|GA|U|740
4V4G|1|GA|G|741
4V4G|1|GA|G|742
4V4G|1|GA|U|743

Current chains

Chain GA

16S ribosomal RNA

Nearby chains

Chain GF

30S ribosomal protein S6

Chain GO

30S ribosomal protein S15

Chain GR

30S ribosomal protein S18