IL_4V4G_552

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CUCU*AGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_552 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2749

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V4G|1|IA|C|1424
4V4G|1|IA|U|1425
4V4G|1|IA|C|1426
4V4G|1|IA|U|1427
*
4V4G|1|IA|A|1473
4V4G|1|IA|G|1474
4V4G|1|IA|G|1475
4V4G|1|IA|G|1476

Current chains

Chain IA

16S ribosomal RNA

Nearby chains

Chain IQ

30S ribosomal protein S17

Chain JB

Large subunit ribosomal RNA; LSU rRNA