IL_4V4G_849

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CCGCU*AUG

Length

8 nucleotides

Bulged bases

4V4G|1|JB|G|2661, 4V4G|1|JB|C|2662, 4V4G|1|JB|U|2706

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_849 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.5588

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V4G|1|JB|C|2659
4V4G|1|JB|C|2660
4V4G|1|JB|G|2661
4V4G|1|JB|C|2662
4V4G|1|JB|U|2663
*
4V4G|1|JB|A|2705
4V4G|1|JB|U|2706
4V4G|1|JB|G|2707

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain JE

50S ribosomal protein L3

Chain JL

50S ribosomal protein L14

Chain JQ

50S ribosomal protein L19