IL_4V4I_021

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V4I|1|w|G|801, 4V4I|1|w|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_021 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.3943

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V4I|1|w|G|674
4V4I|1|w|A|675
4V4I|1|w|A|676
4V4I|1|w|A|677
4V4I|1|w|C|678
*
4V4I|1|w|G|799
4V4I|1|w|A|800
4V4I|1|w|G|801
4V4I|1|w|A|802
4V4I|1|w|U|803
4V4I|1|w|A|804
4V4I|1|w|G|805
4V4I|1|w|C|806

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain J

50S ribosomal protein L15