3D structure

PDB id
4V4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
GGUAAAG*CGAAAAUGAUCGGGGC
Length
23 nucleotides
Bulged bases
4V4I|1|w|U|1026, 4V4I|1|w|A|1127, 4V4I|1|w|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4I_042 not in the Motif Atlas
Geometric match to IL_7RQB_040
Geometric discrepancy: 0.3056
The information below is about IL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

4V4I|1|w|G|1024
4V4I|1|w|G|1025
4V4I|1|w|U|1026
4V4I|1|w|A|1027
4V4I|1|w|A|1028
4V4I|1|w|A|1029
4V4I|1|w|G|1030
*
4V4I|1|w|C|1124
4V4I|1|w|G|1125
4V4I|1|w|A|1126
4V4I|1|w|A|1127
4V4I|1|w|A|1128
4V4I|1|w|A|1129
4V4I|1|w|U|1130
4V4I|1|w|G|1131
4V4I|1|w|A|1132
4V4I|1|w|U|1133
4V4I|1|w|C|1135
4V4I|1|w|G|1136
4V4I|1|w|G|1137
4V4I|1|w|G|1138
4V4I|1|w|G|1139
4V4I|1|w|C|1140

Current chains

Chain w
23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain H
50S ribosomal protein L13
Chain K
50S ribosomal protein L16
Chain b
50S ribosomal protein L36
Chain x
5S ribosomal RNA; 5S rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6325 s