IL_4V4I_053

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_053 not in the Motif Atlas

Homologous match to IL_4WF9_049

Geometric discrepancy: 0.3058

The information below is about IL_4WF9_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V4I|1|w|G|1310
4V4I|1|w|G|1311
4V4I|1|w|U|1312
4V4I|1|w|U|1313
*
4V4I|1|w|A|1603
4V4I|1|w|C|1604

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain R

50S ribosomal protein L23

Chain Z

50S ribosomal protein L34