IL_4V4I_087

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

4V4I|1|w|A|2126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_087 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.4141

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4V4I|1|w|G|2124
4V4I|1|w|G|2125
4V4I|1|w|A|2126
4V4I|1|w|G|2127
*
4V4I|1|w|C|2161
4V4I|1|w|G|2162
4V4I|1|w|C|2163
4V4I|1|w|C|2164
4V4I|1|w|G|2165
4V4I|1|w|G|2166
4V4I|1|w|U|2167
4V4I|1|w|G|2168
4V4I|1|w|A|2169
4V4I|1|w|A|2170
4V4I|1|w|A|2171
4V4I|1|w|U|2172
4V4I|1|w|A|2173
4V4I|1|w|C|2174

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain 0

Transfer RNA; tRNA

Chain A

50S ribosomal protein L1