IL_4V4I_095

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_095 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.2854

The information below is about IL_7A0S_087

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V4I|1|w|C|2466
4V4I|1|w|C|2467
4V4I|1|w|G|2468
4V4I|1|w|A|2469
4V4I|1|w|G|2470
*
4V4I|1|w|C|2480
4V4I|1|w|G|2481
4V4I|1|w|G|2482
4V4I|1|w|C|2483
4V4I|1|w|G|2484

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain T

50S ribosomal protein L25

Chain b

50S ribosomal protein L36