IL_4V4I_106

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V4I|1|w|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_106 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.2237

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V4I|1|w|G|2737
4V4I|1|w|A|2738
4V4I|1|w|U|2739
4V4I|1|w|A|2740
4V4I|1|w|A|2741
4V4I|1|w|C|2742
*
4V4I|1|w|G|2762
4V4I|1|w|G|2763
4V4I|1|w|A|2764
4V4I|1|w|A|2765
4V4I|1|w|G|2766
4V4I|1|w|C|2767

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain H

50S ribosomal protein L13

Chain b

50S ribosomal protein L36