IL_4V4I_136

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4V4I|1|y|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_136 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.3496

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4V4I|1|y|C|569
4V4I|1|y|G|570
4V4I|1|y|U|571
4V4I|1|y|A|572
4V4I|1|y|A|573
4V4I|1|y|A|574
4V4I|1|y|G|575
*
4V4I|1|y|C|880
4V4I|1|y|G|881

Current chains

Chain y

16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain m

30S ribosomal protein S12