IL_4V4I_190

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CUGCAU*AUG(2MG)

Length

10 nucleotides

Bulged bases

4V4I|1|y|C|1054

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_190 not in the Motif Atlas

Homologous match to IL_5J7L_362

Geometric discrepancy: 0.488

The information below is about IL_5J7L_362

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19358.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V4I|1|y|C|1051
4V4I|1|y|U|1052
4V4I|1|y|G|1053
4V4I|1|y|C|1054
4V4I|1|y|A|1055
4V4I|1|y|U|1056
*
4V4I|1|y|A|1204
4V4I|1|y|U|1205
4V4I|1|y|G|1206
4V4I|1|y|2MG|1207

Current chains

Chain y

16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain d

30S ribosomal protein S3

Chain k

30S ribosomal protein S10

Chain o

30S ribosomal protein S14