IL_4V4I_196

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4I_196 not in the Motif Atlas

Homologous match to IL_9DFE_109

Geometric discrepancy: 0.4173

The information below is about IL_9DFE_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V4I|1|w|U|2847
4V4I|1|w|G|2848
4V4I|1|w|U|2849
4V4I|1|w|A|2850
4V4I|1|w|A|2851
4V4I|1|w|G|2852
*
4V4I|1|w|U|2865
4V4I|1|w|U|2866
4V4I|1|w|G|2867
4V4I|1|w|A|2868
4V4I|1|w|G|2869

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain N

50S ribosomal protein L19