IL_4V4J_008

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GUCGUG*CC

Length

8 nucleotides

Bulged bases

4V4J|1|w|U|271|||A, 4V4J|1|w|C|271|||B

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_008 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.3008

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

4V4J|1|w|G|271
4V4J|1|w|U|271|||A
4V4J|1|w|C|271|||B
4V4J|1|w|G|271|||C
4V4J|1|w|U|271|||D
4V4J|1|w|G|272
*
4V4J|1|w|C|365|||A
4V4J|1|w|C|366|||B

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains