IL_4V4J_011

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGAAU*GAUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_011 not in the Motif Atlas

Geometric match to IL_6CZR_145

Geometric discrepancy: 0.3136

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V4J|1|w|C|280
4V4J|1|w|G|281
4V4J|1|w|A|282
4V4J|1|w|A|283
4V4J|1|w|U|284
*
4V4J|1|w|G|356
4V4J|1|w|A|357
4V4J|1|w|U|358
4V4J|1|w|A|359
4V4J|1|w|G|360

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains