IL_4V4J_027
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GA*UCC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_027 not in the Motif Atlas
- Homologous match to IL_7RQB_028
- Geometric discrepancy: 0.2583
- The information below is about IL_7RQB_028
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_42622.4
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V4J|1|w|G|862
4V4J|1|w|A|863
*
4V4J|1|w|U|913
4V4J|1|w|C|914
4V4J|1|w|C|915
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain K
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L25
- Chain U
- 50S ribosomal protein L27
- Chain x
- 5S ribosomal RNA; 5S rRNA
Coloring options: