IL_4V4J_028
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_028 not in the Motif Atlas
- Homologous match to IL_9DFE_028
- Geometric discrepancy: 0.5992
- The information below is about IL_9DFE_028
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_16301.1
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
4V4J|1|w|G|864
4V4J|1|w|C|865
4V4J|1|w|A|866
4V4J|1|w|C|867
4V4J|1|w|U|868
*
4V4J|1|w|A|909
4V4J|1|w|A|910
4V4J|1|w|A|911
4V4J|1|w|C|912
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain K
- 50S ribosomal protein L16
- Chain x
- 5S ribosomal RNA; 5S rRNA
Coloring options: