IL_4V4J_035

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_035 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2316

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V4J|1|w|C|1004
4V4J|1|w|C|1005
4V4J|1|w|C|1006
4V4J|1|w|C|1007
4V4J|1|w|C|1008
4V4J|1|w|A|1009
4V4J|1|w|A|1010
4V4J|1|w|G|1011
*
4V4J|1|w|C|1150
4V4J|1|w|G|1151

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20