IL_4V4J_038
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4V4J|1|w|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_038 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.2282
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4V4J|1|w|G|1024
4V4J|1|w|G|1025
4V4J|1|w|U|1026
4V4J|1|w|A|1027
4V4J|1|w|A|1028
4V4J|1|w|A|1029
4V4J|1|w|G|1030
*
4V4J|1|w|C|1124
4V4J|1|w|G|1125
4V4J|1|w|A|1126
4V4J|1|w|A|1127
4V4J|1|w|A|1128
4V4J|1|w|A|1129
4V4J|1|w|U|1130
4V4J|1|w|G|1131
4V4J|1|w|A|1132
4V4J|1|w|U|1133
4V4J|1|w|C|1135
4V4J|1|w|G|1136
4V4J|1|w|G|1137
4V4J|1|w|G|1138
4V4J|1|w|G|1139
4V4J|1|w|C|1140
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L13
- Chain K
- 50S ribosomal protein L16
- Chain b
- 50S ribosomal protein L36
- Chain x
- 5S ribosomal RNA; 5S rRNA
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