IL_4V4J_040
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CGAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 4V4J|1|w|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_040 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.3436
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V4J|1|w|C|1043
4V4J|1|w|G|1044
4V4J|1|w|A|1045
4V4J|1|w|A|1046
4V4J|1|w|G|1047
4V4J|1|w|A|1048
4V4J|1|w|C|1049
4V4J|1|w|A|1050
4V4J|1|w|G|1051
*
4V4J|1|w|U|1108
4V4J|1|w|C|1109
4V4J|1|w|G|1110
4V4J|1|w|A|1111
4V4J|1|w|G|1112
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain F
- 50S ribosomal protein L6
- Chain b
- 50S ribosomal protein L36
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