IL_4V4J_045

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V4J|1|w|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_045 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.3064

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V4J|1|w|C|1208
4V4J|1|w|G|1209
4V4J|1|w|A|1210
4V4J|1|w|U|1211
4V4J|1|w|G|1212
4V4J|1|w|A|1213
4V4J|1|w|A|1214
4V4J|1|w|G|1215
*
4V4J|1|w|U|1234
4V4J|1|w|G|1235
4V4J|1|w|G|1236
4V4J|1|w|A|1237
4V4J|1|w|G|1238

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain O

50S ribosomal protein L20