IL_4V4J_051
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- UGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_051 not in the Motif Atlas
- Homologous match to IL_4WF9_052
- Geometric discrepancy: 0.2352
- The information below is about IL_4WF9_052
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
4V4J|1|w|U|1357
4V4J|1|w|G|1358
4V4J|1|w|A|1359
4V4J|1|w|A|1360
4V4J|1|w|G|1361
*
4V4J|1|w|C|1370
4V4J|1|w|G|1371
4V4J|1|w|U|1372
4V4J|1|w|A|1373
4V4J|1|w|G|1374
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain V
- LSU ribosomal protein L28P
Coloring options: