IL_4V4J_052

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

4V4J|1|w|C|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_052 not in the Motif Atlas

Homologous match to IL_7RQB_054

Geometric discrepancy: 0.449

The information below is about IL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67474.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V4J|1|w|U|1415
4V4J|1|w|G|1416
*
4V4J|1|w|C|1582
4V4J|1|w|A|1583
4V4J|1|w|C|1585
4V4J|1|w|A|1586
4V4J|1|w|A|1587

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains