3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
UCAAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4J_072 not in the Motif Atlas
Homologous match to IL_7RQB_074
Geometric discrepancy: 0.2546
The information below is about IL_7RQB_074
Detailed Annotation
UAA/GAN with extra stack
Broad Annotation
No text annotation
Motif group
IL_90318.1
Basepair signature
cWW-tSH-L-R-L-R-cWW
Number of instances in this motif group
3

Unit IDs

4V4J|1|w|U|1851
4V4J|1|w|C|1852
4V4J|1|w|A|1853
4V4J|1|w|A|1854
4V4J|1|w|G|1855
*
4V4J|1|w|C|1887
4V4J|1|w|G|1888
4V4J|1|w|A|1889
4V4J|1|w|A|1890
4V4J|1|w|G|1891

Current chains

Chain w
23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain 2
Transfer RNA; tRNA
Chain V
LSU ribosomal protein L28P

Coloring options:


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