IL_4V4J_075
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 4V4J|1|w|A|1938, 4V4J|1|w|U|1939, 4V4J|1|w|U|1944, 4V4J|1|w|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_075 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.2577
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
4V4J|1|w|C|1934
4V4J|1|w|G|1935
4V4J|1|w|A|1936
4V4J|1|w|A|1937
4V4J|1|w|A|1938
4V4J|1|w|U|1939
4V4J|1|w|U|1940
4V4J|1|w|C|1941
4V4J|1|w|C|1942
4V4J|1|w|U|1943
4V4J|1|w|U|1944
4V4J|1|w|G|1945
*
4V4J|1|w|C|1961
4V4J|1|w|C|1962
4V4J|1|w|U|1963
4V4J|1|w|G|1964
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain y
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: