IL_4V4J_077

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

4V4J|1|w|C|2055, 4V4J|1|w|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_077 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.2951

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V4J|1|w|A|2054
4V4J|1|w|C|2055
4V4J|1|w|G|2056
*
4V4J|1|w|C|2612
4V4J|1|w|U|2613
4V4J|1|w|A|2614
4V4J|1|w|U|2615

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain Q

50S ribosomal protein L22

Chain Y

50S ribosomal protein L32