IL_4V4J_088

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

4V4J|1|w|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_088 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.5624

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V4J|1|w|U|2401
4V4J|1|w|C|2402
4V4J|1|w|C|2403
*
4V4J|1|w|G|2414
4V4J|1|w|G|2415

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain a

50S ribosomal protein L35