IL_4V4J_092

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_092 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.2131

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V4J|1|w|C|2466
4V4J|1|w|C|2467
4V4J|1|w|G|2468
4V4J|1|w|A|2469
4V4J|1|w|G|2470
*
4V4J|1|w|C|2480
4V4J|1|w|G|2481
4V4J|1|w|G|2482
4V4J|1|w|C|2483
4V4J|1|w|G|2484

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain b

50S ribosomal protein L36