IL_4V4J_098

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4V4J|1|w|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_098 not in the Motif Atlas

Homologous match to IL_7A0S_093

Geometric discrepancy: 0.2887

The information below is about IL_7A0S_093

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V4J|1|w|U|2636
4V4J|1|w|U|2637
4V4J|1|w|G|2638
4V4J|1|w|A|2639
4V4J|1|w|G|2640
*
4V4J|1|w|C|2774
4V4J|1|w|A|2775
4V4J|1|w|A|2776
4V4J|1|w|G|2777
4V4J|1|w|A|2778
4V4J|1|w|U|2779
4V4J|1|w|G|2780
4V4J|1|w|A|2781
4V4J|1|w|G|2782

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain H

50S ribosomal protein L13