IL_4V4J_100
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CCUCU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 4V4J|1|w|U|2682
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_100 not in the Motif Atlas
- Homologous match to IL_7A0S_095
- Geometric discrepancy: 0.4059
- The information below is about IL_7A0S_095
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
4V4J|1|w|C|2680
4V4J|1|w|C|2681
4V4J|1|w|U|2682
4V4J|1|w|C|2683
4V4J|1|w|U|2684
*
4V4J|1|w|A|2725
4V4J|1|w|U|2726
4V4J|1|w|G|2727
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L14
- Chain L
- 50S ribosomal protein L17
- Chain N
- 50S ribosomal protein L19
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