IL_4V4J_103

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V4J|1|w|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_103 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.2332

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V4J|1|w|G|2737
4V4J|1|w|A|2738
4V4J|1|w|U|2739
4V4J|1|w|A|2740
4V4J|1|w|A|2741
4V4J|1|w|C|2742
*
4V4J|1|w|G|2762
4V4J|1|w|G|2763
4V4J|1|w|A|2764
4V4J|1|w|A|2765
4V4J|1|w|G|2766
4V4J|1|w|C|2767

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain H

50S ribosomal protein L13

Chain b

50S ribosomal protein L36