IL_4V4J_111
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_111 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.2643
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V4J|1|x|C|71
4V4J|1|x|G|72
4V4J|1|x|A|73
4V4J|1|x|U|74
4V4J|1|x|G|75
4V4J|1|x|G|76
4V4J|1|x|U|77
4V4J|1|x|A|78
4V4J|1|x|C|79
*
4V4J|1|x|G|97
4V4J|1|x|G|98
4V4J|1|x|A|99
4V4J|1|x|G|100
4V4J|1|x|A|101
4V4J|1|x|G|102
4V4J|1|x|U|103
4V4J|1|x|A|104
4V4J|1|x|G|105
Current chains
- Chain x
- 5S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain K
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L25
- Chain X
- LSU ribosomal protein L30P
- Chain w
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: