IL_4V4J_117

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4V4J|1|y|G|129|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_117 not in the Motif Atlas

Geometric match to IL_4R4V_001

Geometric discrepancy: 0.341

The information below is about IL_4R4V_001

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

4V4J|1|y|U|129|||A
4V4J|1|y|G|129|||B
4V4J|1|y|A|130
4V4J|1|y|C|131
*
4V4J|1|y|G|231
4V4J|1|y|G|232

Current chains

Chain y

16S RNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain r

30S ribosomal protein S17

Chain u

30S ribosomal protein S20