3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
CCCC*GG
Length
6 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4J_119 not in the Motif Atlas
Geometric match to IL_6JXM_001
Geometric discrepancy: 0.2291
The information below is about IL_6JXM_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_05670.1
Basepair signature
cWW-cWW
Number of instances in this motif group
9

Unit IDs

4V4J|1|y|C|136
4V4J|1|y|C|136|||A
4V4J|1|y|C|136|||B
4V4J|1|y|C|137
*
4V4J|1|y|G|226
4V4J|1|y|G|227

Current chains

Chain y
16S RNA

Nearby chains

Chain n
30S ribosomal protein S13
Chain q
30S ribosomal protein S16
Chain v
30S ribosomal protein Thx

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3681 s