IL_4V4J_120
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 4V4J|1|y|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_120 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.3015
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V4J|1|y|G|148
4V4J|1|y|A|149
4V4J|1|y|C|150
4V4J|1|y|A|151
4V4J|1|y|A|152
4V4J|1|y|C|153
*
4V4J|1|y|G|168
4V4J|1|y|C|169
4V4J|1|y|U|170
4V4J|1|y|A|171
4V4J|1|y|A|172
4V4J|1|y|U|173
4V4J|1|y|C|174
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain u
- 30S ribosomal protein S20
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