IL_4V4J_125

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

UUCC*GGA

Length

7 nucleotides

Bulged bases

4V4J|1|y|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_125 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.3258

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_08770.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V4J|1|y|U|367
4V4J|1|y|U|368
4V4J|1|y|C|369
4V4J|1|y|C|370
*
4V4J|1|y|G|391
4V4J|1|y|G|392
4V4J|1|y|A|393

Current chains

Chain y

16S RNA

Nearby chains

Chain q

30S ribosomal protein S16