IL_4V4J_130
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GAAACC*GACUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_130 not in the Motif Atlas
- Homologous match to IL_4LFB_019
- Geometric discrepancy: 0.2309
- The information below is about IL_4LFB_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31561.1
- Basepair signature
- cWW-L-R-tWH-tWH-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V4J|1|y|G|450
4V4J|1|y|A|451
4V4J|1|y|A|452
4V4J|1|y|A|453
4V4J|1|y|C|454
4V4J|1|y|C|455
*
4V4J|1|y|G|477
4V4J|1|y|A|478
4V4J|1|y|C|479
4V4J|1|y|U|480
4V4J|1|y|G|481
4V4J|1|y|A|482
4V4J|1|y|C|483
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain q
- 30S ribosomal protein S16
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